Hamza Umut Karakurt
Ph.D Student
| Gebze Technical University |
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| Department of Bioengineering | ||
| Computational Systems Biology Group | ||
| Gebze-Kocaeli | ||
| TURKEY | ||
| Mailto: |
hkarakurt[at] gtu.edu.tr |
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| Room: | Bioengineering Building, 210 | |
| Phone: | +90 506 775 47 55 | |
Introduction
I have received my B.Sc degree from Department of Biochemistry at Ege University, Turkey. I continued my graduate education in Gebze Technical University. I have Molecular Biology and Genetics M.Sc degree and Bioinformatics and Systems Biology M.Sc degree. Both of my M.Sc theses focus on analysis, modelling and integration of transcriptome data. My main focus area is analysis, modelling and integration of bulk and single cell RNA-Seq data. I also work on the implementation of machine learning and deep learning approaches in bioinformatics. I had internships in Babraham Institute, Cambridge and Institut Curie, Paris.
I am currently a Ph.D student at Department of Bioengineering at Gebze Technical University and also working as R&D Engineer in Idea Technology Solutions.
Publications
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Integration of transcriptomic profile of SARS-CoV-2 infected normal human bronchial epithelial cells with metabolic and protein-protein interaction networks (2020)
- Turkish Journal of Biology, 44(3),168
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FLASH radiation therapy spares lung progenitor cells from premature senescence and preserves the bulk regenerative capacity of the lung (2020)
- Clinical Cancer Research, 26(6), 1497-1506
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Comparison of the impact of protein-protein interaction networks and local variant features for pathogenicity of non-synonymous single-nucleotide variants (2020)
- 3th The International Symposium on Health Informatics and Bioinformatics, Istanbul/TURKEY (Poster Presentation)
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Metabolic Effects of Bipolar Disorder on Dorsolateral Prefrontal Cortex: A Genome-Scale Metabolic Approach (2019)
- The International Symposium on Health Informatics and Bioinformatics, Izmir/TURKEY (Poster Presentation)