Computational Systems Biology Group

Published Abstracts

• Metabolic network-based analysis of probiotic cheese starter cultures
  • Emrah Özcan, Tunahan Çakır
  • FEBS Journal, 283:138 (2016)
• Genome scale comparison of perturbations in the nitrogen and phosphate metabolism of Streptomyces coelicolor by integrating transcriptome data with a curated metabolic network
  • Hamza Umut Karakurt, Sedef Tunca Gedik, Tunahan Çakır
  • FEBS Journal, 283:143 (2016)
• PHISTO: A New Web Platform for Pathogen-Human Interactions
  • Saliha Durmuş Tekir, Tunahan Çakır, Emre Ardıç, İlknur Karadeniz, Arzucan Özgür, F. Erdoğan Sevilgen, Kutlu Ö. Ülgen
  • Computational Methods in Systems Biology, Series: Lecture Notes in Computer Science, Vol. 8130
    Eds. A. Gupta, T. Henzinger, p.46 (2013)
• Optimization Based Inference of Metabolic Networks from Metabolome Data
  • Melik Öksüz, , Hasan Sadıkoğlu, Tunahan Çakır
  • Computational Methods in Systems Biology, Series: Lecture Notes in Computer Science, Vol. 8130
    Eds. A. Gupta, T. Henzinger, p.46 (2013)
• Investigation of The Effects of Neurological Diseases on Human Brain Metabolism by A Computational Systems Biology Approach
  • Mustafa Sertbaş, Kutlu Ö. Ülgen, Tunahan Çakır
  • New Biotechnology, 29:S150 (2012)
• Network Inference via Computational Analysis of Metabolome Data
  • Melik Öksüz, Hasan Sadıkoğlu, Tunahan Çakır
  • New Biotechnology, 29:S148 (2012)
• PHISTO: Pathogen-Host Interaction Search Tool
  • Saliha Durmuş Tekir, Tunahan Çakır, Ali Sayılırbaş, Ebru Çelik, Seldağ Özcan, İrem Çevik, Arzucan Özgür, F. Erdoğan Sevilgen, Kutlu Ö. Ülgen
  • New Biotechnology, 29:S151 (2012)
• Role of Flexibility and Minimal Enzyme Production in the Prediction of Intracellular Fluxes of Microorganisms
  • Fatih Tarlak, Hasan Sadıkoğlu, Tunahan Çakır
  • New Biotechnology, 29:S146 (2012)
• Comparison of infection strategies of bacteria and viruses
  • Saliha Durmuş Tekir, Tunahan Çakır, Kutlu Ö. Ülgen
  • Febs Journal, 279:518 (2012)
• Stoichiometric modeling of the human red blood cells
  • Saliha Durmuş Tekir, Tunahan Çakır, Kutlu Ö. Ülgen
  • Journal of Biotechnology, 118:S11-S12 (2005)
• Use of metabolome data and metabolic network structure to identify reaction significances
  • Tunahan Çakır, Kiran R. Patil, Betül Kırdar, Z. İlsen Önsan, Kutlu Ö. Ülgen, Jens Nielsen
  • Journal of Biotechnology, 118:S16 (2005)