Onur Sercinoglu, Group Leader
Assistant Professor
Gebze Technical University |
![]() Detailed CV |
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Department of Bioengineering | ||
Computational Systems Biology Group | ||
Gebze-Kocaeli | ||
TURKEY | ||
Mail: | osercinoglu [at] gtu.edu.tr | |
Room: | Bioengineering Building, 148 | |
Phone: | +90 262 605 33 27 |
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Introduction
I received my BSc degree in Bioengineering from Ege University, MSc degree in Biotechnology from Hamburg University of Technology, and PhD degree in Bioengineering from Marmara University.
Between March 2019 and October 2020, I worked as an Assistant Professor of Bioengineering at Bioengineering Department of Recep Tayyip Erdoğan University. I have been an Assistant Professor at Bioengineering Department of Gebze Technical University since October 2020.
Research Areas
I have broad interest in identifying relationships between sequence, structure, dynamics and function of proteins with biomedical importance. For this purpose, we routinely apply computational tools including homology modeling and molecular dynamics simulations. I am also interested in developing novel tools and applications for structural bioinformatics research, and in drug repurposing using computational approaches with a focus on MD simulations and molecular docking.
For a more detailed CV, feel free to visit my personal website as well.
Teaching
- Mass and Energy Balances: BSc Course in Bioengineering Program
- Heat and Mass Transfer in Bioengineering: BSc Course in Bioengineering Program
- Bioreactors and Reaction Kinetics: BsC Course in Bioengineering Program
Selected Publications
For a full list of publications, see PUBLICATIONS page.
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gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations
- Nucleic Acids Research, 46:W1 (2018)
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Sequence-structure-function relationships in class I MHC: A local frustration perspective
- PLOS ONE, 15(5), e0232849 (2020)
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ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism
- Nucleic Acids Research, 47:W1 (2019)
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Identification of novel inhibitors of the ABC transporter BmrA
- Bioorganic Chemistry, 105 (2020)